PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015708-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 351aa    MW: 39244.7 Da    PI: 4.4346
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015708-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.41.9e-2673138171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++lle +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn irwkg
  BGIOSGA015708-PA  73 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 138
                       6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-2870139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.02E-1673136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-3473138IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.7E-2475138IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.20E-35149262No hitNo description
SuperFamilySSF1440741.75E-25150261No hitNo description
PfamPF164211.6E-24154259IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MANAADNEEK NERETVQSEV AKGETVQGPD KECTTGAVKG IKRPRKPKGF KKGSLRSNEG  60
DAGPSLFSPN NCRYDSSLGL LTKKFINLLE GAEDGTLDLN KAAETLEVQK RRIYDITNVL  120
EGVDLIEKTL KNMIRWKGFD MSKPKERERQ ISALKEEIES LYDEESRLDD EIMEAQEKLN  180
ALRVDEDRRK LLYVSKEDIN AIPRFQGSTL IAVNAPRGTY IEVPDPNLDM DIYKDLDNQE  240
KHYQIVFRSA MGPVDCFLIS NHQETFNADQ QMADNLDAAV TSGSSQAPQQ MDYVQASEIG  300
ESNGAREHTS EPSKRDDPVP GIVKIVPSDD IAADYWLSSD ADVSMTDTWG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-2273139774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.607300.0callus| panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-115CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8549941e-115CR854994.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0127D24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633977.10.0transcription factor E2FC
TrEMBLQ01N550.0Q01N55_ORYSA; OSIGBa0127D24.8 protein
STRINGOGLUM04G00590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.33e-84E2F transcription factor 1