PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015610-PA
Common NameOsI_14822
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 162aa    MW: 17897.2 Da    PI: 8.6201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015610-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-054668123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C + F++   L  H+++H
  BGIOSGA015610-PA 46 YTCGYCRREFRSAQALGGHMNVH 68
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-64473No hitNo description
PfamPF139124.2E-64670IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.514673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MESRSAREHG HGHLHQQHQR PWSCSFGFSW PPLQRSPPPS SSSSSYTCGY CRREFRSAQA  60
LGGHMNVHRR ERARLRQFPN PRPHPLPNLN LSPPPPPPPP PPPPQQQQQC YCPGDRPAIV  120
YSFFSTAAAA MAATKGLEVD LELGVGGGME EGLDLELRLG CS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630130.0AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880331.11e-114transcriptional regulator SUPERMAN
TrEMBLA2XQB31e-113A2XQB3_ORYSI; Uncharacterized protein
TrEMBLA3AQZ21e-113A3AQZ2_ORYSJ; Os04g0168100 protein
TrEMBLQ7XNZ81e-113Q7XNZ8_ORYSJ; OSJNBb0089K06.6 protein
STRINGOS04T0168100-001e-114(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-16C2H2 family protein