PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015321-PA | ||||||||
Common Name | OsI_15410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 21605.2 Da PI: 11.587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.2e-10 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++G+g+ ++I+r + Rt+ q+ s+ qky BGIOSGA015321-PA 107 PWSEEEHRLFLLGLDKFGKGDLHSISRNFVISRTPTQVASHAQKY 151 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.63 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-15 | 102 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-15 | 104 | 154 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.7E-8 | 104 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 105 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-8 | 107 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.70E-8 | 107 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAEGADDGDG APGRSSPAVR VRGGARRPSE RGEELAGRPC AERSSHAVLA RGRSWSSPVI 60 GSSGGAVGDC PRLTSIPTRG GRADVVGRYV VGKICSKSEQ ERRKGIPWSE EEHRLFLLGL 120 DKFGKGDLHS ISRNFVISRT PTQVASHAQK YFIRLNSMNR DRRRSSIHDI TSVTAGDVAA 180 QQGPITGQAK AALRRRSGHR A |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15338 | 1e-124 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 24850302 | 1e-124 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606729 | 1e-148 | AL606729.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06, complete sequence. | |||
GenBank | AP014960 | 1e-148 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CR855227 | 1e-148 | CR855227.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159H11-OSIGBa0137A07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688858.1 | 2e-61 | PREDICTED: uncharacterized protein LOC102709047 | ||||
TrEMBL | A2XS15 | 1e-141 | A2XS15_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G06580.1 | 1e-116 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9466 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-39 | MYB family protein |