PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA015306-PA

Common Name

OsI_15431

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 98aa MW: 10933.3 Da PI: 4.5409

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA015306-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.9	6.8e-22	7	86	17	85
E--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 +l ++f+e++g+++e+s+tl++ d+++ rsWev+ r+++++ y+l++GW++F+++ng+++gD++vF++ BGIOSGA015306-PA 7 SLARTFCESIGLVEESSITLMMIDTTStqgdqggsssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCVFTVL 86 799*******************99999*************..9999999**********************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.73	1	98	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.51E-14	6	97	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.5E-16	6	96	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-12	7	87	IPR003340	B3 DNA binding domain
CDD	cd10017	1.03E-7	12	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MPAFMQSLAR TFCESIGLVE ESSITLMMID TTSTQGDQGG SSSSSRSWEV TGRRYKDACY 60 LLGAGWRRFC EDNGVRSGDV CVFTVLDTTL WRVDIERC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662963	1e-165	AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBank	AP014960	1e-165	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881011.1	2e-59	putative B3 domain-containing protein Os04g0346900
Swissprot	Q7XS75	6e-59	Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBL	A2XS35	5e-65	A2XS35_ORYSI; Uncharacterized protein
STRING	OBART04G08270.1	3e-58	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP425	35	187