PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015290-PA
Common NameOsI_15464
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 403aa    MW: 42178.8 Da    PI: 10.1738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015290-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.6e-062052441255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  BGIOSGA015290-PA 205 RRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 244
                       9******************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.258193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-12204262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0014204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-7205248No hitNo description
Gene3DG3DSA:4.10.280.101.3E-11206261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPAAAAATRW RPSATSSAGL  60
GASAATAAPA PTTSATARRS APRRAPPAAP FRGYAAAGGR LSRVSSSKSL GGAAAALDSS  120
EADMNPTTAA AADQPSKPSA AAAARKRKSS AKPKASSSSL PTATATTNAS PKRSKVAAGA  180
GDDGDADADA AEEKPEPAKD YIHVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV  240
QSLQRQVEFL SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSSDPTTTT AFSYTGSPAT  300
ADPFTVYNCW ELDLHTAMQM GATTGLSQDG PIATMAPSPS PLPHHPPLHG FYVWARVPIR  360
IKFGTIKLWK MTGKATCNLV VDNLVAGRRI RIRSNNYSFK LKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879700.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329938140.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO6814750.0FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635665.21e-142LOW QUALITY PROTEIN: transcription factor bHLH62
TrEMBLB8ASI90.0B8ASI9_ORYSI; Uncharacterized protein
STRINGORUFI04G09760.11e-144(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.25e-31bHLH family protein