PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015225-PA
Common NameOsI_15583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 264aa    MW: 28432.2 Da    PI: 10.4884
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015225-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-0876117240
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  BGIOSGA015225-PA  76 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 117
                       68************************************9876 PP

2Myb_DNA-binding22.82.2e-07207249343
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  BGIOSGA015225-PA 207 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTMVQCKKK 249
                       7********************************.********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.95970125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.6E-571117IPR009057Homeodomain-like
SMARTSM007171.4E-574127IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-776119IPR009057Homeodomain-like
PfamPF002491.0E-676117IPR001005SANT/Myb domain
CDDcd001671.32E-577117No hitNo description
SMARTSM007173.3E-6204256IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-8205253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-4207252IPR009057Homeodomain-like
CDDcd001676.01E-6207249No hitNo description
PfamPF002495.1E-6207249IPR001005SANT/Myb domain
PROSITE profilePS500906.098208249IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MERLKKLCDS RGNKDTTEKA RLLRGALSKE GSSGSSNEGK KIQANGVDGS KAKSTSSGEK  60
VTQGNTLSNY EKKEEKPWGR EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA  120
TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKASGDA SSKAPAQPAS  180
SKTSDEKAPA PAPVSNGTPS GTADPEAWSE AQVLALVQAL KAFPKDASQR WERVAAAVPG  240
KTMVQCKKKV AEMQKNFRSK KGAE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984150.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887500.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633497.11e-175dnaJ homolog subfamily C member 2
TrEMBLA2XSJ40.0A2XSJ4_ORYSI; Uncharacterized protein
STRINGONIVA09G09150.10.0(Oryza nivara)
STRINGORGLA02G0354200.10.0(Oryza glaberrima)
STRINGORGLA04G0069500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-64DnaJ domain ;Myb-like DNA-binding domain