PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015178-PA
Common NameOsI_15719
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 329aa    MW: 34840.5 Da    PI: 5.633
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015178-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.72.7e-2716101178
          trihelix   1 rWtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                       rWt+qe+l+Lie++r +e r r rg+       ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ +s+sss+
  BGIOSGA015178-PA  16 RWTRQEILVLIEGKRVVEGRGRgRGRgggggaaAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSLSSPSSSS 101
                       8*******************99533244555559********************************************98888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6321681IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-51680IPR009057Homeodomain-like
PfamPF138372.1E-111693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSGGGEGSGR APRLPRWTRQ EILVLIEGKR VVEGRGRGRG RGGGGGAAAE PTKWAAVAEY  60
CRRHGLERGP VQCRKRWSNL AGDYKKIREW ERSLSSPSSS SAAAGMGKEV SFWAMRNDAR  120
RERRLPGFFD REVYDILEGR GGGNAAAAAA AGKEGEEEKA AVFDSGRAAA GGGGGGGDDG  180
LFSSSEEEED DDEATPPATT PAAAPAPPPA PAPAVPVLTS EKKSDPPRQD ASEQAGTSRA  240
KQPEQIVEDS PAQGAHKRQR SDDASGEAPD LQGQLIEILD RSSRMVAAQL EAQNINCQLD  300
REQRKDQVSS LLGVLGKVAD ALYRIADKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.53710.0leaf| panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636777.10.0trihelix transcription factor ASR3
TrEMBLA0A0E0H0310.0A0A0E0H031_ORYNI; Uncharacterized protein
TrEMBLA2XSY50.0A2XSY5_ORYSI; Uncharacterized protein
STRINGONIVA04G08920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-46Trihelix family protein