PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015023-PA | ||||||||
Common Name | OsI_16034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 179aa MW: 21090.6 Da PI: 8.678 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.1 | 3e-15 | 10 | 38 | 2 | 30 |
---SHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvL 30 rien rqvtf+kRr g+lKKA+ELSvL BGIOSGA015023-PA 10 RIENPVHRQVTFCKRRMGLLKKAKELSVL 38 8***************************9 PP | |||||||
2 | K-box | 59 | 2e-20 | 64 | 150 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++l+ ++ie l++ke l+ +n L++++ BGIOSGA015023-PA 64 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQERII 150 45579**********************868****************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.84E-15 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-13 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.016 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-12 | 10 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.2E-24 | 59 | 149 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.847 | 64 | 156 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLNM EGLIERYKCN LPEAQVESTE 60 QNIPMVIQQD VLFLRREVDL LQNSLRYMYG EKDINHMNLG ELQSLESNLE VWVNNIRSTK 120 MQLMSREIEM LKNKEGILKA ANDILQERII EQTSILDVRG NMMIPQVPFQ LTTESNYYF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 8e-95 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 8e-95 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 5e-54 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 5e-54 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A2XTV3 | 1e-128 | A2XTV3_ORYSI; Uncharacterized protein | ||||
STRING | OBART04G13770.1 | 1e-123 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-39 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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