PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA015021-PA | ||||||||
Common Name | OsI_16036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 29466.2 Da PI: 9.3218 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.8 | 3.9e-25 | 68 | 116 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs++gk+ye + BGIOSGA015021-PA 68 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPHGKIYELA 116 8*********************************************965 PP | |||||||
2 | K-box | 59.2 | 1.7e-20 | 138 | 232 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + +s+e++ + qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++++ ++ie l++ke l+ +n L++ BGIOSGA015021-PA 138 QAESNEQNIPQVIQQDVLLLRQEVDLLQNSLRYMYGErDISHMNLGELQSLESNLEVWVNNIRSTKMQIMSREIEMLKNKEGILKAANDILQE 230 4555677778999***********************978****************************************************99 PP K-box 97 kl 98 ++ BGIOSGA015021-PA 231 RI 232 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-35 | 59 | 118 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.24 | 59 | 119 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-28 | 59 | 135 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.96E-38 | 60 | 133 | No hit | No description |
PRINTS | PR00404 | 6.3E-26 | 61 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 61 | 115 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-24 | 68 | 114 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-26 | 81 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-26 | 96 | 117 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-23 | 141 | 232 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.227 | 147 | 239 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAGLPKLFPV PPKATIKTPP LLRQIQAVIS LKSSGRSKGL AATATASEAS SNYDSVGDMA 60 RGKVQMRRIE NPVHRQVTFC KRRMGLLKKA KELSVLCDAD IGVIVFSPHG KIYELATNGN 120 MQGLIERYKN KSNLPEAQAE SNEQNIPQVI QQDVLLLRQE VDLLQNSLRY MYGERDISHM 180 NLGELQSLES NLEVWVNNIR STKMQIMSRE IEMLKNKEGI LKAANDILQE RIIAQTSIMD 240 VGCNMMIPQV PFQLTTESNY YF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-15 | 59 | 142 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 5e-15 | 59 | 142 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 5e-15 | 59 | 142 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 5e-15 | 59 | 142 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 5e-77 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 5e-77 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A2XTV6 | 0.0 | A2XTV6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G12010.1 | 1e-149 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-57 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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