PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014750-PA
Common NameOsI_16582
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 281aa    MW: 30772.4 Da    PI: 7.9329
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014750-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-182572148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT +Ed llv+ v+q+G g+W+++++  g++R++k+c++rw +yl
  BGIOSGA014750-PA 25 KGPWTSQEDALLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 72
                      79********************************************97 PP
2Myb_DNA-binding54.23.3e-1778122147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  BGIOSGA014750-PA  78 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 122
                       8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6542072IPR017930Myb domain
SuperFamilySSF466891.39E-2923119IPR009057Homeodomain-like
SMARTSM007171.5E-152474IPR001005SANT/Myb domain
PfamPF002499.9E-172572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-232679IPR009057Homeodomain-like
CDDcd001671.05E-112772No hitNo description
PROSITE profilePS5129425.39673127IPR017930Myb domain
SMARTSM007176.6E-1677125IPR001005SANT/Myb domain
PfamPF002491.0E-1478122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2480125IPR009057Homeodomain-like
CDDcd001675.54E-1182123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAAAEVQSAA GWGRQLQQDG GGWRKGPWTS QEDALLVEHV RQHGEGRWNS VSKLTGLKRS  60
GKSCRLRWVN YLRPDLKRGK ITPQEESIIV QLHALWGNRW STIARSLPGR TDNEIKNYWR  120
THFKKGKPSK NIERARARFL KQRREMQQSQ QLQQPTLMPT PTPQSKDIIV AETGDARTDD  180
DAGGAAAAVA PSSSSSSLSM AGREAEDLIM HQDAMDDLMM CPAMSYHLIL HGAAVAGHQL  240
SDGGGSCCAS TSEDYGSSED DGATWGSLWN LDGAAGACTL W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-2741259126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948290.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096200.0AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634463.10.0transcription factor WER
TrEMBLA2XVD90.0A2XVD9_ORYSI; Uncharacterized protein
TrEMBLQ01I730.0Q01I73_ORYSA; OSIGBa0101P20.9 protein
STRINGORUFI04G19690.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-66myb domain protein 79