PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014710-PA
Common NameOsI_16650
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 90aa    MW: 10422.2 Da    PI: 10.1726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014710-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ lv  ++++G g+W++ ++  g+ R++k+c++rw +yl
  BGIOSGA014710-PA 14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-27564IPR009057Homeodomain-like
PROSITE profilePS5129422.775965IPR017930Myb domain
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002491.9E-161461IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-251588IPR009057Homeodomain-like
CDDcd001671.05E-101661No hitNo description
Gene3DG3DSA:1.10.10.604.6E-96588IPR009057Homeodomain-like
PROSITE profilePS512947.0736690IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDKVLVAHIQ RHGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEDTIIH LHELLGNRLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-16128825100MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.33881e-70callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379884611e-70
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4677331e-145AF467733.1 Oryza sativa myb protein mRNA, complete cds.
GenBankAY3234841e-145AY323484.1 Oryza sativa (japonica cultivar-group) myb-related protein (LTR1) mRNA, complete cds.
GenBankY114141e-145Y11414.1 O.sativa mRNA for myb factor, 1202 bp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633465.16e-61transcription factor MYB4
SwissprotQ7XBH45e-62MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0E0PBL38e-60A0A0E0PBL3_ORYRU; Uncharacterized protein
TrEMBLA2XVJ47e-60A2XVJ4_ORYSI; Uncharacterized protein
STRINGORUFI04G20280.11e-60(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-57myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]