PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014620-PA | ||||||||
Common Name | OsI_16852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 450aa MW: 49384.2 Da PI: 7.5406 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.2 | 1.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ BGIOSGA014620-PA 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-9 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.85E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 5.46E-15 | 6 | 40 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.8E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.6E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR 60 ASKLKPPTLK LKEQKQLKKN PSHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC 120 APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSQM EKLAKDLNSI MHEEQLLYLS 180 GSSEEDLIYH SATPVDSFEM GYGSMLLRPN SKSLEEESEA SSIPADNKSY ITSESYSGSV 240 SFVYSESKAT SNQNVITEQP KKFLVQTSDN ARRANLHTEN QDTLEIANSP LVSLHMEGKD 300 SEETRVKTSA SNRLTKSTMN PLKRPHDTHF QSSVELRGTM RSPKRVSKYG DAMGLKCQAS 360 FMPKPGNGKD LACSDRALNL FMLPPDKLSM LVPPQYANND SDQDLLLDVP LNARHPEAEL 420 LCQPSQLSSV AHSSTSEGGN AGGEGRLKQP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14573 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980752 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070729 | 0.0 | AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880746.1 | 0.0 | uncharacterized protein LOC4336558 | ||||
TrEMBL | B8ASM7 | 0.0 | B8ASM7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G18740.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 7e-56 | GATA transcription factor 26 |