PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014565-PA
Common NameOsI_16953
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 553aa    MW: 60002.7 Da    PI: 4.5655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014565-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12380427355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+L+
  BGIOSGA014565-PA 380 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 427
                       5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-3726178IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17380442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.23E-15380431No hitNo description
Gene3DG3DSA:4.10.280.108.8E-17381436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10381427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-15383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEETPLPSGK NFRSQLAAAA RSINWTVLTW KDGFYNGEIK TRKITNSMNL TADELVLQRS  60
EQLRELYDSL LSGECGHRAR RPVAALLPED LGDTEWYYVV CMTYAFGPGQ GLPGKSFASN  120
EFVWLTNAQS ADRKLFHRAL IAKTIVCVPF IMHGVLELGT TDPISEDPAL VDRIAASFWD  180
TPPRAAFSSE AGDADIVVFE DLDHGNAAVE ATTTTVPGEP HAVAGGEVAE CEPNADNDLE  240
QITMDDIGEL YSLCEELDVV RPLDDDSSSW AVADPWSSFQ LVPTSSPAPD QAPAAEATDV  300
DDVVVAALDG SSIDGSCRPS PSSFVAWKRT ADSDEVQAVP LISGEPPQKL LKKAVAGAGA  360
WMNNGDSSAA AMTTQGSSIK NHVMSERRRR EKLNEMFLIL KSVVPSIHKV DKASILAETI  420
AYLKELEKRV EELESSSQPS PCPLETRSRR KCREITGKKV SAGAKRKAPA PEVASDDDTD  480
GERRHCVSNV NVTIMDNKEV LLELQCQWKE LLMTRVFDAI KGVSLDVLSV QASTSDGLLG  540
LKIQAKVVIS AAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-152417843192Transcription factor MYC3
4rqw_B3e-152417843192Transcription factor MYC3
4rru_A5e-152417482227Transcription factor MYC3
4rs9_A3e-152417843192Transcription factor MYC3
4ywc_A5e-152417482227Transcription factor MYC3
4ywc_B5e-152417482227Transcription factor MYC3
4yz6_A3e-152417843192Transcription factor MYC3
5t0f_A4e-152417443188Transcription factor MYC3
5t0q_A4e-152417443188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390ERRRRE
2386391RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO10865390.0
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU398600.0U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880379.10.0anthocyanin regulatory Lc protein isoform X2
SwissprotP135261e-165ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLB8ASW50.0B8ASW5_ORYSI; Uncharacterized protein
STRINGOS04T0557800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-47bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]