PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA014530-PA

Common Name

OsI_17020

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 405aa MW: 40400.8 Da PI: 7.74

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA014530-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	101	162	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss BGIOSGA014530-PA 101 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 162 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	97	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAAKLRCPEE QELLGGSEVD AVGEPSCMDA AHWHQGLGLV KPMEEMLMAA NAAAGANPNP 60 AATAPSSVTG GALRGGGGGG APPVAGGAGA GSTERRARPQ KEKALNCPRC NSTNTKFCYY 120 NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSAASASPA SASTANSVVT 180 SASMSMSMAS TGGGASKNPK LVHEGAQDLN LAFPHHGGLQ APGEFPAFPS LESSSVCNPG 240 GPMGTNGRGG GALSAMELLR STGCYMPLQV PMQMPAEYAT PGFALGEFRA PPPPPQSSQS 300 LLGFSLDAHG SVGGPSAAGF GSSAGLQGVP ESTGRLLFPF EDLKPTVSSG TGGGGASGGG 360 AGVDGGHQFD HGKEQQAGGG GGGPGGHDTP GFWNGMIGGG SGTSW

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAAKLRCPEE QELLGGSEVD AVGEPSCMDA AHWHQGLGLV KPMEEMLMAA NAAAGANPNP  60
AATAPSSVTG GALRGGGGGG APPVAGGAGA GSTERRARPQ KEKALNCPRC NSTNTKFCYY  120
NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSSAASASPA SASTANSVVT  180
SASMSMSMAS TGGGASKNPK LVHEGAQDLN LAFPHHGGLQ APGEFPAFPS LESSSVCNPG  240
GPMGTNGRGG GALSAMELLR STGCYMPLQV PMQMPAEYAT PGFALGEFRA PPPPPQSSQS  300
LLGFSLDAHG SVGGPSAAGF GSSAGLQGVP ESTGRLLFPF EDLKPTVSSG TGGGGASGGG  360
AGVDGGHQFD HGKEQQAGGG GGGPGGHDTP GFWNGMIGGG SGTSW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.4182	0.0	flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	4996639	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028129	0.0	AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637008.1	0.0	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	0.0	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A2XWJ0	0.0	A2XWJ0_ORYSI; Uncharacterized protein
STRING	ORGLA04G0190600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-42	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]