PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014440-PA | ||||||||
Common Name | OsI_17214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 39639.4 Da PI: 4.7292 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G +W++ ++ g+ R++k+c++rw +yl BGIOSGA014440-PA 16 KGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.6e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l BGIOSGA014440-PA 69 RGNFTAEEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.03 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.662 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.00E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP 120 EQKKGGGKSK KKTTCTDVLV PSPSPSSSTT TTTNCSSGDS AGEQSNTSKE EEEETDKIEI 180 PMLELDPCCF DFDMLVDPVV PDTYCPAVSA SASASAPTSP CSSTSPSCAR AGVDPLLDLP 240 EIVDLGPELW SIMDGGAGDG CTEAPPPAWS NAAAAAAANA TVATTTSLEE EGKEWWLEDL 300 EKELGLWGPT DDYHCHPGPQ GQPGRAGPPP SAVVEDPVSC YFQAGPTAAA TWQGHEPSAV 360 ITSNPMDYYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-28 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-28 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.31381 | 0.0 | panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988623 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111960 | 0.0 | AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635813.1 | 0.0 | myb-related protein Zm1 | ||||
Swissprot | P20024 | 1e-103 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A2XX21 | 0.0 | A2XX21_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA04G0202400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 4e-69 | myb domain protein 63 |
Publications ? help Back to Top | |||
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