PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014428-PA | ||||||||
Common Name | FL, OsI_016632, OSL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LFY | ||||||||
Protein Properties | Length: 389aa MW: 42544.3 Da PI: 8.4779 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 545.2 | 2.3e-166 | 1 | 378 | 1 | 386 |
FLO_LFY 1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmk 91 mdp++ fsa+ f+wd + +pa + + ++ a+ releel+ +yGvr++tva+i+elGft+stL+ m+++eldd+m+ BGIOSGA014428-PA 1 MDPNDaFSAAhPFRWDLGPP---APAPVPPPPPPPP------PPPPANVPRELEELVAGYGVRMSTVARISELGFTASTLLAMTERELDDMMA 84 777654776559****5322...2223322222222......234566789****************************************** PP FLO_LFY 92 slseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseee 184 +l+ +fr+dll+Ger+G++aa+raer rl++ +++ +++ +++d +sqe+lsee++ +agsgg+g +++ +++ kk+ ++ BGIOSGA014428-PA 85 ALAGLFRWDLLLGERFGLRAALRAERGRLMSLG--GRHH---GHQSGSTVDGASQEVLSEEHD-----MAGSGGMGDDDNGRRMVTGKKQAKK 167 ******************************965..5555...6788899***********976.....6788888888888877777666666 PP FLO_LFY 185 kkkaskk.kqkrkkkkelkseededeeeeededeeg........sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqk 268 + a+k k++rkk ++l+ + +ede + ded+ g +g +g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq+ BGIOSGA014428-PA 168 GSAARKGkKARRKKVDDLRLDMQEDEMDCCDEDGGGgsestessAGGGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQS 260 66555543667777777666644444443333333334455554888899******************************************* PP FLO_LFY 269 iakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfna 361 +ak +G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeas+alrra+k+rgenvGawrqacy+plv+i+ar+g+didavf+a BGIOSGA014428-PA 261 MAKLHGHKSPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASDALRRAYKARGENVGAWRQACYAPLVDISARHGFDIDAVFAA 353 ********************************************************************************************* PP FLO_LFY 362 hprLsiWYvPtkLrqLChlerskas 386 hprL+iWYvPt+LrqLCh++rs+++ BGIOSGA014428-PA 354 HPRLAIWYVPTRLRQLCHQARSSHA 378 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 7.8E-192 | 1 | 378 | IPR002910 | Floricaula/leafy protein |
SuperFamily | SSF101447 | 4.18E-6 | 27 | 37 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDPNDAFSAA HPFRWDLGPP APAPVPPPPP PPPPPPPANV PRELEELVAG YGVRMSTVAR 60 ISELGFTAST LLAMTERELD DMMAALAGLF RWDLLLGERF GLRAALRAER GRLMSLGGRH 120 HGHQSGSTVD GASQEVLSEE HDMAGSGGMG DDDNGRRMVT GKKQAKKGSA ARKGKKARRK 180 KVDDLRLDMQ EDEMDCCDED GGGGSESTES SAGGGGGERQ REHPFVVTEP GEVARAKKNG 240 LDYLFHLYEQ CRLFLLQVQS MAKLHGHKSP TKVTNQVFRY AKKVGASYIN KPKMRHYVHC 300 YALHCLDEEA SDALRRAYKA RGENVGAWRQ ACYAPLVDIS ARHGFDIDAV FAAHPRLAIW 360 YVPTRLRQLC HQARSSHAAA AAALPPPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 8e-99 | 216 | 384 | 2 | 170 | PROTEIN LEAFY |
2vy2_A | 8e-99 | 216 | 384 | 2 | 170 | PROTEIN LEAFY |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 2274789 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005620 | 0.0 | AB005620.1 Oryza sativa mRNA for RFL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635355.1 | 0.0 | probable transcription factor FL | ||||
Swissprot | A2XX39 | 0.0 | FL_ORYSI; Probable transcription factor FL | ||||
TrEMBL | A0A0D3FZQ0 | 0.0 | A0A0D3FZQ0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | B8ATL1 | 0.0 | B8ATL1_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PPC7 | 0.0 | I1PPC7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0204600.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART04G23870.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8269 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-97 | floral meristem identity control protein LEAFY (LFY) |