PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014417-PA
Common NameOsI_17259
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRF
Protein Properties Length: 387aa    MW: 41618.5 Da    PI: 7.6013
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014417-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28e-25114158145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  BGIOSGA014417-PA 114 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 158
                       79****************************************996 PP
2QLQ591.4e-205388237
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  BGIOSGA014417-PA 53 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 88
                      9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-115288IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1875388IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-145387IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517114158IPR014977WRC domain
PfamPF088794.0E-21115157IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSFIF PFCRSSPLSA VGEEAQQHMM GARWAAAVAR PPPFTAAQYE  60
ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC  120
RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPHSQPPAT APAAAVTSTA  180
FQNHSLYPAI ANGGGANGGG GGGGGGGSAP GSFALGSNTQ LHMDNAASYS TVAAGAGNKD  240
FRYSAYGVRP LADEHSPLIT GAMDTSIDNS WCLLPSQTST FSVSSYPMLG NLSELDQNTI  300
CSLPKVEREP LSFFGSDYVT VDSGKQENQT LRPFFDEWPK ARDSWPDLAD DNSLATFSAT  360
QLSISIPMAT SDFSTTSSRS HNGIYSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.594250.0callus| flower| leaf| panicle| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5466930.0FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634332.10.0growth-regulating factor 3 isoform X1
RefseqXP_015634333.10.0growth-regulating factor 3 isoform X2
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLB8ATM90.0B8ATM9_ORYSI; Uncharacterized protein
STRINGORUFI04G25800.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-47growth-regulating factor 5