PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014342-PA | ||||||||
Common Name | OsI_17416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 22275.2 Da PI: 10.1861 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.7 | 5.6e-50 | 5 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.........................kvkaeekewyfFskrdkk 67 lppGfrFhP+deelvv+yL +k++g v + +vd++k+ePw+Lp+ +++ + +ewyfFs +d+k BGIOSGA014342-PA 5 LPPGFRFHPRDEELVVDYLYHKLSGGGEFYGGVaMVDVDLNKCEPWELPAyflhnliifparararaagrrrredAARVGATEWYFFSLHDRK 97 79**********************9995554555***************6699**********9999998877664455888*********** PP NAM 68 yatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 yatg+r+nrat+sgyWkatgkd++++++ +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+ BGIOSGA014342-PA 98 YATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 168 ***************************977777777776777***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-46 | 3 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.288 | 5 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 6 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEANLPPGFR FHPRDEELVV DYLYHKLSGG GEFYGGVAMV DVDLNKCEPW ELPAYFLHNL 60 IIFPARARAR AAGRRRREDA ARVGATEWYF FSLHDRKYAT GQRTNRATRS GYWKATGKDR 120 AIVTRRRAAA GEAVAGGEVV GMRKTLVFYQ GRAPRGSKTE WVMHEFRVDG HAVADHPSSS 180 TSSSSSNLLK VLHASICFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-38 | 2 | 168 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.80160 | 0.0 | callus |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662970 | 0.0 | AL662970.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633392.1 | 2e-92 | NAC domain-containing protein 21/22 | ||||
TrEMBL | B8AU78 | 1e-145 | B8AU78_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI04G27160.2 | 1e-135 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-50 | NAC family protein |