PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014332-PA
Common NameOsI_17439
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 334aa    MW: 36224.5 Da    PI: 9.1391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014332-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.62.1e-4851741128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk.........................kvkaeekewyfF 61 
                       lppGfrFhP+deelvv+yL +k++g         +    ++ +vd++k+ePw+Lp+                         +++ + +ewyfF
  BGIOSGA014332-PA   5 LPPGFRFHPRDEELVVDYLYHKLSGGGggggageFYGGVAMVDVDLNKCEPWELPAyflhnliifparararaagrrrradAARVGATEWYFF 97 
                       79**********************99988776543332369**************6699**********9999998887664445888***** PP

               NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +d+kyatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  BGIOSGA014332-PA  98 SLHDRKYATGQRTNRATRSGYWKATGKDRAIVTRrraaggeavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 174
                       *********************************977877777776677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-493207IPR003441NAC domain
PROSITE profilePS5100550.8345207IPR003441NAC domain
PfamPF023659.6E-266174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEANLPPGFR FHPRDEELVV DYLYHKLSGG GGGGGAGEFY GGVAMVDVDL NKCEPWELPA  60
YFLHNLIIFP ARARARAAGR RRRADAARVG ATEWYFFSLH DRKYATGQRT NRATRSGYWK  120
ATGKDRAIVT RRRAAGGEAV AGGEVVGMRK TLVFYQGRAP RGSKTEWVMH EFRVDGHAVA  180
DHPSSSTSSS SSNLLKEDWV LCRVFYKSRT ANPRPVVSGE AAVSLSGELS LPPPPPLPVA  240
PAVVDGYTGG GYYEQDSSAG YHHHHHRPPT SAALPFKDLT DFRDLLSNMV QGVGGGAAAA  300
AAAKSEGFHL GWSEEESSGY VQQSAMASQA WNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-40221217173NAC domain-containing protein 19
3swm_B4e-40221217173NAC domain-containing protein 19
3swm_C4e-40221217173NAC domain-containing protein 19
3swm_D4e-40221217173NAC domain-containing protein 19
3swp_A4e-40221217173NAC domain-containing protein 19
3swp_B4e-40221217173NAC domain-containing protein 19
3swp_C4e-40221217173NAC domain-containing protein 19
3swp_D4e-40221217173NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801600.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-160NAC domain-containing protein 21/22
TrEMBLA2XXM90.0A2XXM9_ORYSI; Uncharacterized protein
STRINGORGLA04G0226100.11e-179(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.17e-57NAC family protein