PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014304-PA
Common NameOsI_17520
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 784aa    MW: 85201.3 Da    PI: 5.7257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014304-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20105161157
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  BGIOSGA014304-PA 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 161
                       688999************************************************995 PP
2START203.77.3e-642965202206
                       HHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS
             START   2 laeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetla 77 
                       la +a++elv++a+++ep+W+  +         e + ++e+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d ++    +++ + 
  BGIOSGA014304-PA 296 LAVAAMEELVRMAQLDEPLWSVAPpldaaaaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIVS 388
                       6789********************9*9999999999999999999887779*******************************66666666666 PP

                       EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
             START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                       +a tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+sk
  BGIOSGA014304-PA 389 RAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSK 477
                       *****************************************************************98....7********************* PP

                       EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       vtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  BGIOSGA014304-PA 478 VTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 520
                       *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2285160IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2092162IPR009057Homeodomain-like
PROSITE profilePS5007117.07102162IPR001356Homeobox domain
SMARTSM003892.3E-20103166IPR001356Homeobox domain
CDDcd000861.35E-19104163No hitNo description
PfamPF000466.4E-18105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084841.658286523IPR002913START domain
SuperFamilySSF559616.73E-35288522No hitNo description
CDDcd088751.68E-119290519No hitNo description
SMARTSM002341.0E-57295520IPR002913START domain
PfamPF018526.2E-54296520IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-6360516IPR023393START-like domain
SuperFamilySSF559612.4E-23541774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MMIPARHMPS MIGRNGAAYG SSSALSLSQP NLLDNHQFQQ AFQHQQQQHH LLDQIPATTA  60
ESGDNMIRSR ASDPLGGDEF ESKSGSENVD GVSVDDQDPN QRPRKKRYHR HTQHQIQEME  120
AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ LRSDNEKLRA  180
ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL REEIDRISAI AAKYVGKPMV  240
PFPVLSNPMA AAASRAPLDL PVAPYGVPGD MFGGGGAGEL LRGVQSEVDK PMIVDLAVAA  300
MEELVRMAQL DEPLWSVAPP LDAAAAAMET LSEEEYARMF PRGLGPKQYG LRSEASRDSA  360
VVIMTHANLV EILMDANQYA AVFSNIVSRA VTLEVLSTGV AGNYNGALQV MSVEFQVPSP  420
LVPTRESYFV RYCKQNADGT WAVVDVSLDS LRPSPVLKCR RRPSGCLIQE MPNGYSKVTW  480
VEHVEVDDRS VHNIYKLLVN SGLAFGARRW VGTLDRQCER LASVMASNIP TSDIGVITSS  540
EGRKSMLKLA ERMVVSFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN  600
AATSFWLPVP PKRVFDFLRD ESSRSEWDIL SNGGIVQEMA HIANGRDQGN CVSLLRVNSS  660
NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAH  720
DGGDGDGGVG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVSGE  780
SNPQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.124320.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO313390960.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016450.0AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636338.10.0homeobox-leucine zipper protein ROC2 isoform X1
RefseqXP_015636339.10.0homeobox-leucine zipper protein ROC2 isoform X1
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLB8AUT50.0B8AUT5_ORYSI; Uncharacterized protein
STRINGORGLA04G0231200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]