PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014158-PA
Common NameARF11, ARF5, MP, OsI_017171, OSIGBa0099L20.10
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 926aa    MW: 101965 Da    PI: 6.1892
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014158-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44e-21143230183
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F 
  BGIOSGA014158-PA 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI 230
                       89*********************999*****9555555.49**********************************************96 PP
2Auxin_resp117.51.1e-38240322183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaas++s F+++YnPr+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+
  BGIOSGA014158-PA 240 AAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 322
                       79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-39133236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-34136243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-19142229No hitNo description
SMARTSM010192.2E-16143248IPR003340B3 DNA binding domain
PfamPF023627.8E-19143230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011143245IPR003340B3 DNA binding domain
PfamPF065074.6E-34240322IPR010525Auxin response factor
PfamPF023091.9E-10777910IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-9820902No hitNo description
PROSITE profilePS5174525.501823907IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS  120
ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN  180
QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI SMHIGVLAAA  240
AHAASSGSSF TIYYNPRTSP SPFVIPVARY NKATYMQPSV GMRFAMMFET EESSKRRYTG  300
TVVGISDYDP MRWPNSKWRN LQVEWDEHGY GERPERVSIW DIETPENTLV FPSSTLNSKR  360
QCLPGYGVSV PGMEIGSANM SSFPRAQGNP YGSLQHIPAV GSELAIMLLN QSGQTLGSPL  420
SFHQSSYSSI IQNVKQNYIP PLTVSTSACL TKQESLPSDD AQHQFHMANM QNGDLEGSEV  480
QPVIDSISES KLNATSRDPR NTDSYTSRST SEQNSKGEPR GKTRRSKKGL PHKTVSEKSD  540
LSSAPSWICD NQQVGLESKL VGCDEQVNCG NIEDSSGALT QGNFVGQPHG HQVEQKGVLS  600
PPKVESSKSP DGGKSVNSFP NQGCFSQFID GLDWMTQPSY YQDSNVIQPA GVSENIFSSS  660
ADIPPSMIAD TMETFQASCL SDCLPNSIQE FISSPDLNSL TFLSPDMQNL EVQLQHDGSN  720
LPSTSNSFVQ MSFSEESASQ SANLSGLHME STHRSINTTS CSQPMSTGGF DAGMYSKLPR  780
LKESQILSLP EIHTNSMGTS ACSMDATEYS LDRSAKPMKP PVRTYTKVQK QGSVGRSIDV  840
TGFRNYHELR SAIACMFGLQ GKLEHPGSSE WKLVYVDYEN DVLLVGDDPW EEFINCVRCI  900
RILSPSEVQQ MSENGMHVLN DCIQAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-17513455390Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.485130.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886610.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712920.0AB071292.1 Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881052.10.0auxin response factor 11-like isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA3AYC70.0A3AYC7_ORYSJ; Auxin response factor
STRINGORGLA04G0248600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-179ARF family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]
  2. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  3. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]