PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014119-PA
Common NameOsI_17874
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 833aa    MW: 92572 Da    PI: 6.3629
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014119-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22152253199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  BGIOSGA014119-PA 152 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 240
                       99***********************9*****86555544..8************************************************..8 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  BGIOSGA014119-PA 241 NEKNQLLLGIRRA 253
                       899999****997 PP
2Auxin_resp112.63.8e-37278361183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  BGIOSGA014119-PA 278 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 361
                       79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.98E-48137281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-41144267IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-21151252No hitNo description
PfamPF023627.8E-21152253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224152254IPR003340B3 DNA binding domain
SMARTSM010191.4E-23152254IPR003340B3 DNA binding domain
PfamPF065071.6E-32278361IPR010525Auxin response factor
PfamPF023091.6E-7727818IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-7730809No hitNo description
PROSITE profilePS5174524.037734818IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MSSSSAASIG PPQPPPPPAP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ  60
VAASTNKEVE GHIPNYPNLP AQLICQLHDV TMHADVETDE VYAQMTLQPL NPVRRLGFLH  120
DVCSAEVLMQ EQNDAYLPAE MGIMSKQPTN YFCKTLTASD TSTHGGFSVP RRAAERVFPP  180
LDFTQQPPAQ ELIARDIHDI EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW  240
NEKNQLLLGI RRASRPQTVM PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE  300
FVIPLSKYIK AVFHTRISVG MRFRMLFETE ESSVRRYMGT ITEVSDADPV RWPSSYWRSV  360
KVGWDESTAG ERPPRVSLWE IEPLTTFPMY PSLFPLRVKH PWYSGVASLH DDSNALMWLR  420
GVAGEGGFQS LNFQSPGIGS WGQQRLHPSL LSSDHDQYQA VVAAAAASQS GGYLKQQFLH  480
LQQPMQSPQE HCNLNPLLQQ QILQQASQQQ IINPDAQNIQ TMLSPSAIQQ QLQQLQQMQQ  540
VQNDQKQKIQ PDQSYQVPTS AVLPSPTSLP SHLREKFGFS DPNANSSSFI TSSSSDNMLD  600
SSFLQGSSKA VDLSRFNQPV ASEQQQQQAW KQKFMGSQSV SFGGSVLHNS PTSKDGSVEN  660
KIGRDVQNQS LFSPQVDSSS LLYNMVPNLT SNVSDGNLST IPSGSTYLQN AMYGCLDDSS  720
GLLQNTGEND PATRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMFGI KGQLDDPDRS  780
GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KMGKQGNDPR YLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592438247388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801920.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329814780.0
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712980.0AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636872.10.0auxin response factor 12 isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLB8ARE10.0B8ARE1_ORYSI; Auxin response factor
STRINGOMERI04G24270.50.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6