PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA014092-PA | ||||||||
Common Name | OsI_17918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 32485.8 Da PI: 5.4071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.6e-07 | 31 | 79 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45 g WT e ++ + +a + G + W++ a+ + g+t+ +++ ++ BGIOSGA014092-PA 31 GGWTREQEKAFENALATVGDDeeegdgLWEKLAEAVE-GKTADEVRRHYE 79 56*****************99****************.**********95 PP | |||||||
2 | Myb_DNA-binding | 39.7 | 1.2e-12 | 147 | 191 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky BGIOSGA014092-PA 147 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 191 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.851 | 28 | 86 | IPR017884 | SANT domain |
SMART | SM00717 | 2.6E-5 | 29 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-5 | 31 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.31E-9 | 32 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.65E-6 | 33 | 82 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 140 | 196 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 142 | 197 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 144 | 194 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.0E-17 | 144 | 194 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.82E-10 | 147 | 192 | No hit | No description |
Pfam | PF00249 | 3.7E-11 | 147 | 191 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 147 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAVEEASSSS GGGRGGGGGG GGEEGLSGCG GGWTREQEKA FENALATVGD DEEEGDGLWE 60 KLAEAVEGKT ADEVRRHYEL LVEDVDGIEA GRVPLLVYAG DGGVEEGSAG GGKKGSAGGG 120 GGGGGGGGHG EKGSAKSAEQ ERRKGIAWTE DEHRLFLLGL EKYGKGDWRS ISRNFVISRT 180 PTQVASHAQK YFIRLNSMNR ERRRSSIHDI TSVNNGDTSA AQGPITGQPN GPSANPGKSS 240 KQSPQPANAP PGVDAYGTTI GQPVGGPLVS AVGTPVTLPV PAAPHIAYGM HAPVPGAVVP 300 GAPVNMPPMP YPMPPPTSHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-14 | 28 | 103 | 6 | 78 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 19 | GGRGGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100773 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991375 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068623 | 0.0 | AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence. | |||
GenBank | AK106166 | 0.0 | AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636999.1 | 1e-174 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-101 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | B8ARG2 | 0.0 | B8ARG2_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q259I5 | 0.0 | Q259I5_ORYSA; H0101F08.8 protein | ||||
STRING | ONIVA04G28100.2 | 1e-174 | (Oryza nivara) | ||||
STRING | OBART04G29570.1 | 1e-175 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 8e-79 | MYB family protein |
Publications ? help Back to Top | |||
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