PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA013905-PA | ||||||||
Common Name | OsI_14241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 41961.8 Da PI: 6.4008 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.4 | 6.7e-07 | 165 | 186 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H BGIOSGA013905-PA 165 FCGVCGKGFKRDANLRMHMRGH 186 6*******************98 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 288 | 302 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H BGIOSGA013905-PA 288 CGTSFSRKDKLFAHV 302 **************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.14E-5 | 162 | 189 | No hit | No description |
SMART | SM00355 | 0.011 | 164 | 186 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.78 | 164 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.3E-6 | 166 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 42 | 218 | 251 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 33 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MMMSSSVDHF SNNSNNNQAM YLEQDEDFSQ MIMELCDFDA SSTTQARHGG EAAAGDARAV 60 LTYLTFLEQK IGHLRGIISS TPNPPPQIVA AELSCIVVQL VSISKNLAAA RRGGDDADAD 120 AKHDGSSDAD EGGDGDGDGE RAPPRGPYEV VQIEKEEILA PHVHFCGVCG KGFKRDANLR 180 MHMRGHGDEY KSSAALAKPD AGGAPPSPSR SPARRRFYSC PYVGCKRNRE HKSFQPLKTP 240 ICVKNHYRRS HCDKSFTCRR CNVKKFSVVA DLRTHEKHCG RDRWVCSCGT SFSRKDKLFA 300 HVAIFDGHSP ALPPEDYDDD AASGQLPHAA GEAVGRTVDT NRFFSDGLMI KGSMDDERGT 360 LSPMGLDYCE FDGIDLFAAA AFDF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.75821 | 0.0 | callus| flower| panicle| stem | ||||
Os.99099 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764220 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630047.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q9C8N5 | 1e-102 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | B8AN58 | 0.0 | B8AN58_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI03G42070.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 5e-95 | C2H2 family protein |