PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013684-PA
Common NameOsI_013324, PCF6
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 358aa    MW: 36427.2 Da    PI: 8.6888
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013684-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-36491641105
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesss 79 
                       a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  ++  +  +s+
  BGIOSGA013684-PA  49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRRRSQ 137
                       5899*************************************************************8888876643321....22223233333 PP

               TCP  80 ssasnsssgkaaksaa.kskksqksaa 105
                       +++++ s+++ ++s+  +sk s+k+ +
  BGIOSGA013684-PA 138 QQQQQLSNKSGCSSTSeTSKGSDKEVT 164
                       333333333333333323333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3551160IPR005333Transcription factor, TCP
PROSITE profilePS5136932.60752110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY  60
TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA  120
IPHAAAADAA PTRRRSQQQQ QQLSNKSGCS STSETSKGSD KEVTVASAPA QAASFTELLI  180
AGVAASSAGG GAIGNGADCV GIAHPGKGGA EGASTYGFSA ASSFGDAPPI GMVPAPPFNF  240
SAPGADMAAH YSLAQDQLAA PPPPAGGDYN LNFSMSSGFL GANRGTLQSN SPSNMSGHHH  300
HHHQQQLQRL DGSTISFLLG HAAAAAHPAA SEGQITSTAA LQLWDGFRHS GMKEKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2657111155Putative transcription factor PCF6
5zkt_B8e-2657111155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.198440.0flower| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160121530.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.10.0transcription factor PCF6
SwissprotA2XMN10.0PCF6_ORYSI; Transcription factor PCF6
TrEMBLA0A0E0GUK90.0A0A0E0GUK9_ORYNI; Uncharacterized protein
STRINGONIVA03G37780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-34TCP family protein
Publications ? help Back to Top
  1. Kosugi S,Ohashi Y
    DNA binding and dimerization specificity and potential targets for the TCP protein family.
    Plant J., 2002. 30(3): p. 337-48
    [PMID:12000681]