PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013385-PA
Common NameOsI_13144
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 476aa    MW: 49264.6 Da    PI: 4.7284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013385-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014247267121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       ++C++Cg++F ++  L  H  
  BGIOSGA013385-PA 247 FVCSICGRCFGSHQALGGHVL 267
                       89********99998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-7245269No hitNo description
SMARTSM003550.13247269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411247274IPR007087Zinc finger, C2H2
PfamPF139123.0E-4247265IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-7401428No hitNo description
PROSITE profilePS5015710.076406433IPR007087Zinc finger, C2H2
SMARTSM003550.13406428IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-7406430IPR007087Zinc finger, C2H2
PROSITE patternPS000280408428IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVDRYVFL ARQPAPPVDR  60
DDAEADAGAE GTGCCKRKRR VVDDDDDDDG FSPRQPALLD GSGGQAAAEE EDDEGSSDDD  120
DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI  180
AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAEAA  240
ERASKRFVCS ICGRCFGSHQ ALGGHVLGHK KKAKNAAIAA AARDATTTAV TEAVAPASQR  300
QSFFAADING QDERGCDGAE GSRYDDDEEK SPVVVDDVAA CHDADVDESR GHGKAESAPA  360
IDAGGDAGNN KVAHGDGEEN DKIAGVVVAS SHDGDSDVGK MKIVQHKCDE CGKVCLTGQA  420
LGGHMSKHRR TRPAANGGEG PATATVADGG AQTVRLIGDD VCLQRAVAIA GFHSAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GSB30.0A0A0E0GSB3_ORYNI; Uncharacterized protein
TrEMBLA2XKZ90.0A2XKZ9_ORYSI; Uncharacterized protein
STRINGONIVA03G32010.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1638077