PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA013306-PA | ||||||||
Common Name | OsI_12981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRF | ||||||||
Protein Properties | Length: 417aa MW: 46930 Da PI: 9.8459 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.3 | 6.4e-24 | 142 | 186 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ BGIOSGA013306-PA 142 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 186 79****************************************997 PP | |||||||
2 | QLQ | 57.3 | 4.8e-20 | 83 | 118 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k BGIOSGA013306-PA 83 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 118 9******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-11 | 82 | 118 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-14 | 83 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.762 | 83 | 118 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.803 | 142 | 186 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.6E-20 | 143 | 185 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MELGEVLGLQ GLTVPSTKEG DLSLIKRAAA GSFTQAAAAS YPSPFLDEQK MLRFAKAAHT 60 LPSGLDFGRE NEQRFLLSRT KRPFTPSQWM ELEHQALIYK YLNAKAPIPS SLLISISKSF 120 RSSANRMSWR PLYQGFPNAD SDPEPGRCRR TDGKKWRCSK EAMADHKYCE RHINRNRHRS 180 RKPVENQSRK TVKETPCAGS LSSSVGQGSF KKAKVNEMKP RSISYWTDSL NRTMANKEKG 240 NKAAEENNGP LLNLTNQQPT LSLFSQLKQQ NKPEKFNTAG DSESISSNTM LKPWESSNQQ 300 NNKSIPFTKM HDRGCLQSVL QNFSLPKDEK MEFQKSKDSN VMTVPSTFYS SPEDPRVSCH 360 APNMAQMQED SISSSWEMPQ GGPLGEILTN SKNPDDSIMK PEARPYGWLL NLEDHAM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.99872 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32968677 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058659 | 0.0 | AK058659.1 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650403.1 | 0.0 | PREDICTED: growth-regulating factor 9 | ||||
Swissprot | Q9FRG8 | 0.0 | GRF9_ORYSJ; Growth-regulating factor 9 | ||||
TrEMBL | A2XKK1 | 0.0 | A2XKK1_ORYSI; Uncharacterized protein | ||||
STRING | OS03T0674700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13124 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-34 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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