PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013306-PA
Common NameOsI_12981
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRF
Protein Properties Length: 417aa    MW: 46930 Da    PI: 9.8459
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013306-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.36.4e-24142186145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+
  BGIOSGA013306-PA 142 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 186
                       79****************************************997 PP

2QLQ57.34.8e-2083118237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  BGIOSGA013306-PA  83 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 118
                       9******************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-1182118IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-1483116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.76283118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.803142186IPR014977WRC domain
PfamPF088793.6E-20143185IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MELGEVLGLQ GLTVPSTKEG DLSLIKRAAA GSFTQAAAAS YPSPFLDEQK MLRFAKAAHT  60
LPSGLDFGRE NEQRFLLSRT KRPFTPSQWM ELEHQALIYK YLNAKAPIPS SLLISISKSF  120
RSSANRMSWR PLYQGFPNAD SDPEPGRCRR TDGKKWRCSK EAMADHKYCE RHINRNRHRS  180
RKPVENQSRK TVKETPCAGS LSSSVGQGSF KKAKVNEMKP RSISYWTDSL NRTMANKEKG  240
NKAAEENNGP LLNLTNQQPT LSLFSQLKQQ NKPEKFNTAG DSESISSNTM LKPWESSNQQ  300
NNKSIPFTKM HDRGCLQSVL QNFSLPKDEK MEFQKSKDSN VMTVPSTFYS SPEDPRVSCH  360
APNMAQMQED SISSSWEMPQ GGPLGEILTN SKNPDDSIMK PEARPYGWLL NLEDHAM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.998720.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329686770.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0586590.0AK058659.1 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650403.10.0PREDICTED: growth-regulating factor 9
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLA2XKK10.0A2XKK1_ORYSI; Uncharacterized protein
STRINGOS03T0674700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-34growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]