PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013134-PA
Common NameOsI_12634
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 357aa    MW: 39884.6 Da    PI: 8.6938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013134-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.7e-18351161097
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       + + + +++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  BGIOSGA013134-PA  35 TDSMHSMIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 116
                       4455679*******888888..5669***************..**************************************..66665 PP
2B344.62.6e-142683511496
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       ++l l  ++a++  ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L++gD+++++l+++ s+ +++v+ 
  BGIOSGA013134-PA 268 CQLELGARYAAAVHLPDRR--QAVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLCVGDICLLELKKHeSKLTMTVHT 351
                       6777777888787777555..5899999*********..555555224445557**********************877888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-2423121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2026121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.60526119IPR003340B3 DNA binding domain
CDDcd100174.70E-2028117No hitNo description
SMARTSM010191.0E-1129119IPR003340B3 DNA binding domain
PfamPF023621.8E-1635116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-17244350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-16245350IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-13250350No hitNo description
SMARTSM010190.013260356IPR003340B3 DNA binding domain
PfamPF023628.5E-12268352IPR003340B3 DNA binding domain
PROSITE profilePS508639.968286353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT VLQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG  120
CERVFSCAGI KTSSCVHDKT VDPVDTSGRS SDDTAQPSRS ERFARCQRDT SNDRRNTASL  180
TAVSSSSEES ENVSLKSNRN GVSDESQESE DSEGPAGPPY ILSWKSKRRL SSLQKKIIKE  240
KVRSIQSEVP IYVAIMNKSN IGLISSPCQL ELGARYAAAV HLPDRRQAVV LQRMGQRWDT  300
VMQTKSGRCT TRRFLINGWS RFVRDNRLCV GDICLLELKK HESKLTMTVH TIFSQQS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.728291e-162callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689972.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like
SwissprotQ10GP01e-136Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850
TrEMBLA2XJL90.0A2XJL9_ORYSI; Uncharacterized protein
STRINGORUFI03G27190.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein