PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013091-PA
Common NameOsI_12544
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 344aa    MW: 38054.3 Da    PI: 8.5432
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013091-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015253275123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cgk+  + s L  H+++H
  BGIOSGA013091-PA 253 HECRLCGKVLASGSALGGHMKSH 275
                       78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-5830No hitNo description
SMARTSM0035510830IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64835IPR007087Zinc finger, C2H2
PfamPF139122.2E-61030IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-585110No hitNo description
SMARTSM0035513090110IPR015880Zinc finger, C2H2-like
PfamPF139120.005790110IPR007087Zinc finger, C2H2
PROSITE profilePS501578.70490118IPR007087Zinc finger, C2H2
SMARTSM003550.14253275IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-8253276IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723253276IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAQAEKQRWC KLCNKSFPSY CSLGGHMNLH STRRRKKKPP PSPRKAPPIT GASGSRYDFR  60
ERCRQRPVAP QSQPDHASSD DEPWTLAPKT ECQLCFKAFH SCDALSMHMK MVMVEQRASR  120
KTSSANFCGV DDGDHGFAAV SYAHCKRARS KRIRMDVFPA PVVVVTHGTE VEDAACILVM  180
LSKDAYKGSD SLDEDPQMDG SLECGPQKTE MEPNSYRLGV TGDTELIKPE NSSSYEEIKF  240
GSLSNVLKAT AIHECRLCGK VLASGSALGG HMKSHSVPAH KKVATFPKTS VTPRKQLLEV  300
QNELHELNLP ALSNRDCSST RTESELNPWW VASSIQSERM MGVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338RRKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629985.10.0uncharacterized protein LOC107280366
TrEMBLB8AM600.0B8AM60_ORYSI; Uncharacterized protein
STRINGOBART03G25540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-09C2H2-like zinc finger protein