PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA012915-PA
Common NameOsI_12128
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 523aa    MW: 57973.2 Da    PI: 4.3221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA012915-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.7e-07339387247
                       SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       +rWT eE+ l++++v   ++      W+  +r ++ g+t  +++s+++++
  BGIOSGA012915-PA 339 QRWTDEEESLFYRVVYSNPPSlgknFWHFLPRALP-GKTSMELVSYYFNV 387
                       79**************988668888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0055337390IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-5339388IPR009057Homeodomain-like
CDDcd001673.10E-6340388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDSMVFSHNK NSNQFDPLSY VNLSGLDADS QSVSFTDMNS RDAPSNSHVT DVGKENMLNN  60
PEESKIASTG LKPGSPISPE NFSFSSLPGS SCHLSTLDHG KRPLSDVRPF QVACKRPKQI  120
DENTWSTSTF ETSFSDLADE TREPDYIYHN SGISACNTSS SIPYSNLEQL IGEENLYLPD  180
WVTTFPGYTG DFWPAPVADQ VDDIDSPIHD HLPRKAVAIG PDHQADIPEW RPRISMTVPY  240
GSGSCADLSY SSVSTSGSAP RDEDSESDKW IKHCVIEMPS SCSVAWVGDH GRDCGCSDEG  300
SIRCVRRHVL ESRENLKRIF GEDKFRELGL CEMGEDIAQR WTDEEESLFY RVVYSNPPSL  360
GKNFWHFLPR ALPGKTSMEL VSYYFNVFML RKRAQQNRSE PLHVDSDDDE VPDEPSVTED  420
EDSAVESPAH DYYVNNPMSP ESEDSFHEKV ADSLSGLRDG PSQKPLGSNT DNPGGDADVQ  480
DESCTSFEDH NGAHGSNGVQ CAEFHMMLPN AALDHYSDRG ACM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.74050.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856360.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8311880.0CT831188.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631894.10.0uncharacterized protein LOC4333157
RefseqXP_015631895.10.0uncharacterized protein LOC4333157
TrEMBLB8AKG90.0B8AKG9_ORYSI; Uncharacterized protein
STRINGOGLUM03G22800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1443166