PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA012409-PA | ||||||||
Common Name | OsI_11134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 150aa MW: 16624.9 Da PI: 10.7839 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 25.3 | 4.1e-08 | 21 | 94 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70 W++ e+ aL++a ++ r g l+ ++W++ ++++ ++ r+ qCk++++ l+kr k+++ + + BGIOSGA012409-PA 21 WSDGETSALLDAWGPRNIRAAGGPLRTADWRACAAAVtarraVDGRAPRTVDQCKNRLDYLKKRLKAERSRLAG 94 *************************************98887778889*******************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-13 | 20 | 100 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRNIRA AGGPLRTADW RACAAAVTAR 60 RAVDGRAPRT VDQCKNRLDY LKKRLKAERS RLAGTYERVE VAKQKEATRL EERRLEAMRD 120 LEIERMRILV DVAISASAVA DTATAASSSW |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115452432 | 1e-146 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137072 | 1e-144 | AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence. | |||
GenBank | AC213130 | 1e-144 | AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence. | |||
GenBank | AP014959 | 1e-144 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-144 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698074.1 | 1e-34 | trihelix transcription factor ASIL1-like | ||||
Refseq | XP_025792102.1 | 2e-33 | uncharacterized protein LOC112873338 | ||||
TrEMBL | A2XFJ6 | 1e-99 | A2XFJ6_ORYSI; Uncharacterized protein | ||||
STRING | GRMZM2G452695_P01 | 3e-32 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14022 | 13 | 13 |