PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA012408-PA | ||||||||
Common Name | OsI_11133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 238aa MW: 25426.1 Da PI: 10.1329 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.3 | 4.6e-09 | 20 | 102 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ e+ aLi+a ++ + +rg l +++W++ ++++ + r +r+ +C+ + + l+ ryk++ + s +++f++ BGIOSGA012408-PA 20 WSDGETAALIDAWDPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRARCRARVQTLKERYKRELAKPPP------SGWRHFSR 102 ***************************************999888889*******************98665553......24555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.7E-15 | 18 | 105 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSSKPSPQQ QQQQRANEWW SDGETAALID AWDPLHVARS RGPLPAKDWR AAASAVNARR 60 AAAGRRHNRT RARCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLSG PPPGFPPKTM 120 PPASVKKEEE ECQDEAVGGG GGSGGLLGRW GCPDEAEERG RGVVPGGGGG DEAGRGVRAR 180 GVGEAGSGGE GGDGDGEGHA GSRQAEGGEA GHLNTYGMDV VARAMLSMIT ERRRRTQY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115452430 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880270.1 | 1e-69 | uncharacterized protein LOC4332524 | ||||
TrEMBL | A2XFJ5 | 1e-168 | A2XFJ5_ORYSI; Uncharacterized protein | ||||
STRING | OMERI02G32990.1 | 5e-87 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14753 | 12 | 13 |