PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA011927-PA | ||||||||
Common Name | OsI_10142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 14916 Da PI: 6.5094 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.6 | 3.9e-12 | 41 | 129 | 10 | 95 |
HHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 10 vlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++++ +++ +f e++ g++ + ++ + + +s++++l+ r k++r +lt+GW++ +a+ +egD+++F++++ + l+v+ BGIOSGA011927-PA 41 LMTNAKMTFAVQFSERYinkyiGSP--IDDLMVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCLFHFKEVdDVLVLKVH 129 5677889999999999998764333..33344445567799999993.4444459************************9876566655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.41E-9 | 40 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-9 | 42 | 127 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-10 | 45 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.45E-8 | 46 | 132 | No hit | No description |
PROSITE profile | PS50863 | 9.037 | 78 | 132 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MGDGNEVIDI SSDSDDGQYG PRTFSGFDKY CCKFAAVKRT LMTNAKMTFA VQFSERYINK 60 YIGSPIDDLM VSMAGTTQSY QMRLKRSKDS RAMLTTGWNQ LIDAKAFDEG DVCLFHFKEV 120 DDVLVLKVHV LK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070845 | 1e-170 | AK070845.1 Oryza sativa Japonica Group cDNA clone:J023070F17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | B7EIH2 | 3e-63 | Y3643_ORYSJ; B3 domain-containing protein Os03g0164300 | ||||
TrEMBL | B8ANX3 | 5e-94 | B8ANX3_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM01G49620.1 | 3e-79 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19020 | 5 | 5 |
Publications ? help Back to Top | |||
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