PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011873-PA
Common NameOsI_10052
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 379aa    MW: 40893.6 Da    PI: 6.4327
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011873-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.34.6e-27122208371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  BGIOSGA011873-PA 122 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnsilppdpdnpnaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 208
                       689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-1311379IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.0E-45116213IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-37120208IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.1E-25123208IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.11E-20123209IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.99E-40213316IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-40215333No hitNo description
SMARTSM011388.4E-80215377IPR014889Transcription factor DP, C-terminal
PfamPF087813.9E-41216350IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVSGVAHRPD DDGGRAASTF QRPPQPAGAR PSLATPPPSG GAQSASTSGG SAGSPSSRSE  60
QHVPAAAGMA AGAAAASTPI SENTFLRLND LDIHGDDAPS SQAPTSKKKK RGARAVGPDK  120
GGRGLRQFSM KVCEKVESKG RTTYNEVADE LVAEFADPNN SILPPDPDNP NAQQYDEKNI  180
RRRVYDALNV LMAMEIISKD KKEIQWKGLP RTSINDIEDL QTELVGLKSR IEKKNTYLQE  240
LQDQFVGMQK LIQRNEQLYG SGNIPSGGVA LPFILVQTRP HATVEVEISE DMQLVHFDFN  300
STPFELHDDS FVLKAMSSCG EEQIDGIHDL ISNGGESSSM PNIYRQQVQQ PARSTNGTAR  360
LPSSPPIPGI LKGRVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-34114213193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264170.0callus| flower| leaf| panicle| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245890.0AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628001.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-136DPB_ARATH; Transcription factor-like protein DPB
TrEMBLB8ANC90.0B8ANC9_ORYSI; Uncharacterized protein
TrEMBLQ84VA00.0Q84VA0_ORYSJ; E2F dimerization factor
STRINGORGLA03G0038000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132Transcription factor DP