PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA011871-PA | ||||||||
Common Name | OsI_10045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 1471aa MW: 161197 Da PI: 6.1052 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 1361 | 1386 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C+++F +k +L+ H+r+ + BGIOSGA011871-PA 1361 FQCDieFCDMTFETKAELRAHQRNiC 1386 899999*****************877 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00042 | 1386 | 1408 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H BGIOSGA011871-PA 1386 CTdeSCGKRFSSHKYLKRHQCVH 1408 77778***************998 PP | |||||||
3 | zf-C2H2 | 13.7 | 0.00019 | 1444 | 1470 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ dCg+sF+ s++ rH ++ H BGIOSGA011871-PA 1444 YKCSapDCGQSFRYVSDYSRHRKKfnH 1470 99********************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 9.1E-13 | 29 | 70 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.605 | 30 | 71 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.3E-13 | 31 | 64 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 4.12E-28 | 212 | 394 | No hit | No description |
SMART | SM00558 | 8.5E-49 | 229 | 398 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 34.774 | 232 | 398 | IPR003347 | JmjC domain |
Pfam | PF02373 | 3.0E-37 | 262 | 381 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 1355 | 1383 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 12 | 1361 | 1383 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.538 | 1361 | 1383 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 1384 | 1408 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.006 | 1384 | 1413 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1386 | 1408 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.4E-6 | 1386 | 1420 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-7 | 1390 | 1414 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.01E-10 | 1408 | 1464 | No hit | No description |
SMART | SM00355 | 6.6E-4 | 1414 | 1438 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.967 | 1414 | 1443 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.9E-11 | 1415 | 1438 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1416 | 1438 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-10 | 1439 | 1466 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.14 | 1444 | 1470 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.365 | 1444 | 1471 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1446 | 1470 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1471 aa Download sequence Send to blast |
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC 60 KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PSPAAASDSS IPPSSSSPPP ASAAVFTTRH 120 QELGNPRRGR PTPQVLKQVW QSGERYTLDQ FESKSRAFSK THLAGLHEPT ALAVESLFWK 180 ASADRPIYIE YANDVPGSGF AAPVQLQRKK KQKRETAPMD EWEKSSGWRL SNSPWNLQAI 240 ARAPGSLTRF MPDDVPGVTS PMVYIGMLFS WFAWHVEDHD LHSLNFLHTG APKTWYAVPG 300 DRAVELEEVI RVHGYGGNTD RIASLAVLGE KTTLMSPEVL IDNGVPCCRL VQYPGEFVVT 360 FPRAYHVGFS HGFNCGEAAN FATPQWLKFA KEAAVRRAVM NYLPMLSHQQ LLYLLAVSFI 420 SRNPRELLSG IRTSRLRDRK KEDRELLVKQ EFLQDMISEN ELICSFLGKK SVDNVVLWEP 480 DLLPSLTALH PCSSCSKAPE KKGEDGPRIG STQSSSKDDS SSDGTACMTG TQSKGLSMDS 540 KQAPEGEKLD TDDGDDLPFD LSIDSGSLTC VACGILGYPF MAILQPSRKA LEEISLVDKE 600 RYKLSCEKEI CSNVLPCSPN DGSSGCPLIA NRSSSPVENA NLSHQDVKPI RSDISLMGKE 660 FNGTLGKHIG TSCSCSSENT IHPYGDTETP EKKIPSDCPG SELSKQSGRG DVNVPDVEGS 720 EETISWNTGC AFARPRIFCL QHALEIEELL ASKGGVHALI ICHADYVKLK ALAISIAEEI 780 EFQFDYKDVA LANASKSNLH LINISIDDEG YEEEGTDWTS RMGLNLKHSS KIRKETSESQ 840 EQPPLSFWGL FSKPSPISVV SNLKWLCRKA RTPYKVIGYA SSPDVVATPD KVKPAVTKTQ 900 IDTSGNAHEN IGSEQTLQQD CVLQESNDVA DMCKRPKVND QDGHSLINIP IAVAEYPMMH 960 QVCERPDSPT TVAVSAGKPT REQCGAESTE LSTVKQFLDN GLIAEGGSMN FISNHEHLES 1020 DNATSVCKDE QLQVQQDQLA MVLCNNPNTE LVAGELHGGA ASSTLENEDS CGNTSYCSDT 1080 VLKNSKPDTD DQPETCDRSV VLVTPKSSCD QMISSSDRSC SLTLDCPVST DAAFSSEKLS 1140 MAHDLMGSEL QAVHNSKAEV AASLTDVKGA KLNSIHTAQL PHESPSSDFI ISEGAQSAST 1200 TAIPRKNGTS MHTESNSIDI LLGVLADESK VSSGKDEVGK ASLTLMTLAG NDQSADDVTQ 1260 DEVAEITDPS HGFCASDIVS RSIGSSNRTN IICYARRKHK RKSGSEFNIN SPQSLGSFVR 1320 SPCESLRPRT RPAIVEDMTN ETKTAEASTA NKRKKAKVEA FQCDIEFCDM TFETKAELRA 1380 HQRNICTDES CGKRFSSHKY LKRHQCVHRD ERPFKCPWDG CPMTFKWLWA QTEHIRVHTG 1440 ERPYKCSAPD CGQSFRYVSD YSRHRKKFNH Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 1e-74 | 23 | 412 | 8 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 1e-74 | 23 | 412 | 8 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 213 | QRKKKQKR |
2 | 207 | 214 | RKKKQKRE |
3 | 1295 | 1301 | RRKHKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996136 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630480.1 | 0.0 | lysine-specific demethylase SE14-like isoform X1 | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | A2XCL2 | 0.0 | A2XCL2_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI03G03680.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |