PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA011583-PA | ||||||||
Common Name | OsI_09711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 114aa MW: 11765 Da PI: 4.6997 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.5 | 3.6e-13 | 61 | 96 | 1 | 36 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+ BGIOSGA011583-PA 61 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSR 96 8**********************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MPPFSAAGGE GAPSPISSRP PPPEQAAAAA AEEQLNGSSL EHDGVLGGEE GDRGGSSAGN 60 RWPRQETLAL LKIRSEMDAA FREAALKGPL WEEVSRSDVI KHAASIPSPT IPKG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.39576 | 1e-162 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297600228 | 1e-162 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121490 | 1e-159 | AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence. | |||
GenBank | AC134237 | 1e-159 | AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence. | |||
GenBank | AK241800 | 1e-159 | AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence. | |||
GenBank | AP014959 | 1e-159 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628078.1 | 2e-56 | trihelix transcription factor GTL1 | ||||
TrEMBL | A2XBP9 | 2e-73 | A2XBP9_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM03G01010.1 | 8e-56 | (Oryza glumipatula) | ||||
STRING | ORUFI03G00820.1 | 9e-56 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15223 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-16 | Trihelix family protein |