PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011326-PA
Common NameOsI_10277
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 333aa    MW: 35763.2 Da    PI: 4.2312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011326-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-1796145255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  BGIOSGA011326-PA  96 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 145
                       69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.54E-1695153No hitNo description
SuperFamilySSF541712.75E-2196154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3096154IPR001471AP2/ERF domain
PROSITE profilePS5103223.39396153IPR001471AP2/ERF domain
PfamPF008474.4E-1096145IPR001471AP2/ERF domain
SMARTSM003804.9E-3496159IPR001471AP2/ERF domain
PRINTSPR003672.0E-1297108IPR001471AP2/ERF domain
PRINTSPR003672.0E-12135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGDA NNAKKKGARA DDFEAAFRDF DNDSDDEEMM  60
LEEAEEEEAT SEHKPFVFRA KKAAAAASSR RRKPAQYRGV RRRPWGKWAA EIRDPVKGIR  120
VWLGTFTNAE AAALAYDDAA RAIRGDRAKL NFPSATTPDT RKRGRATAAA APAVKATPVI  180
NLVEEEDEEE EVAAAMASIK YEPETSESSE SNALPDFSWQ GMSASDEFAV AAAALSLDSD  240
DDLAKKRPRT EPEDTTTTTD SGSGDDTDAL FDALLFADQY NYFNGGAYES LDSLFSADAV  300
QTTAAAAAAD QGMGLWSFDD GCCLVDVEAS LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2093153263ATERF1
3gcc_A1e-2093153263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190102RRKPAQYRGVRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.128890.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO565675860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4056910.0CU405691.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C112O04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-159ethylene-responsive transcription factor ERF073
TrEMBLB8APP30.0B8APP3_ORYSI; Uncharacterized protein
STRINGOS03T0183300-011e-158(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.35e-17ERF family protein