PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011151-PA
Common NameOsI_10678
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 365aa    MW: 38681.6 Da    PI: 10.1482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011151-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.9e-0779101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++Cg+ F r  nL+ H r+H
  BGIOSGA011151-PA  79 YVCEICGQGFQREQNLQMHRRRH 101
                       9*********************9 PP
2zf-C2H2110.0013179201123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  C k +  +s++k H++t+
  BGIOSGA011151-PA 179 WVCARCAKGYAVQSDYKAHLKTC 201
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-576102No hitNo description
Gene3DG3DSA:3.30.160.601.1E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.5E-479101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75979101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355270179206IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD  60
PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLFKR PASATASEIG  120
GAAGGAGGAA AGAGAGGARK RVFLCPEPIC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV  180
CARCAKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA  240
TTLPSGGGGA CAAAAGGEEE QQREEVRRAL EEKTAADSAR ERAREEAAAA ERALEDARRA  300
RHRARGELEK ALALRDHAAR LIAQVTCHAC RQRSLAVMSM AAIDGHGASA VAREHLRGGG  360
VGAGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-16175229357Zinc finger protein JACKDAW
5b3h_F5e-16175229357Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.800980.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166313430.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376980.0CT837698.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence.
GenBankJQ6815280.0JQ681528.1 Oryza sativa Indica Group cultivar Zhongxian3037 LPA1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629419.11e-129protein indeterminate-domain 16
SwissprotF4IPE33e-98IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLB8AJY80.0B8AJY8_ORYSI; Uncharacterized protein
STRINGORUFI03G10000.11e-128(Oryza rufipogon)
STRINGOS03T0237250-001e-128(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.14e-88C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]