PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011102-PA
Common NameOsI_10775
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 321aa    MW: 34490.1 Da    PI: 5.3829
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011102-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC168.86.6e-531202251101
             NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                       ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+
  BGIOSGA011102-PA 120 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDV 212
                       89*****997665555689************************************************************************** PP

             NF-YC  89 fdflvdivprdel 101
                       fdflvdivpr+e 
  BGIOSGA011102-PA 213 FDFLVDIVPREEA 225
                       **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-31108216IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.7E-37136207IPR009072Histone-fold
PfamPF008084.5E-20144207IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSRLAAVYRL FTTDEEIHEL TGERSVVKTK DAELELVIPA VFVRCNKKSK PEFFFPLFYI  60
NKNSLLTGSL ELFVTMDNQQ LPYAGQPAAA GAGAPVPGVP GAGGPPAVPH HHLLQQQQAQ  120
LQAFWAYQRQ EAERASASDF KNHQLPLARI KKIMKADEDV RMISAEAPVL FAKACELFIL  180
ELTIRSWLHA EENKRRTLQR NDVAAAIART DVFDFLVDIV PREEAKEEPG SALGFAAGGP  240
AGAVGAAGPA AGLPYYYPPM GQPAPMMPAW HVPAWDPAWQ QGAAPDVDQG AAGSFSEEGQ  300
QGFAGHGGAA AGFPPAPPSS E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-50128222395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.120370.0leaf| panicle| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8365390.0CT836539.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628319.11e-176nuclear transcription factor Y subunit C-2
RefseqXP_015628320.11e-176nuclear transcription factor Y subunit C-2
SwissprotA6BLW41e-177NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLB8AKD00.0B8AKD0_ORYSI; Uncharacterized protein
STRINGONIVA03G11340.11e-178(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-62nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]