PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA010835-PA

Common Name

OsI_11360

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 150aa MW: 16448.5 Da PI: 10.9536

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA010835-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.4	1.7e-14	80	121	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r +r++kNRe+A rsR+RK+a++ eLe+k+ Le+eNk+L+ BGIOSGA010835-PA 80 RRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENKRLR 121 6899*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-10	76	148	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	78	121	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-10	80	122	No hit	No description
Pfam	PF00170	6.4E-12	80	121	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.09E-17	80	121	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-14	80	122	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MTLEDFLSRA GADSGSGGGG ADGARWARAH HHHVGRPVPR PLGLGAGPVL DALYHDGPVS 60 GSKRAPAAGE GAAAEKTVER RKKRMIKNRE SAARSRARKQ AYTNELENKI SRLEEENKRL 120 RMHKAPEPVV QYVPQQEPKN QLRRVNSADF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	1e-167	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632165.1	1e-80	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	6e-29	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	B8ANF0	1e-104	B8ANF0_ORYSI; Uncharacterized protein
STRING	OMERI03G14190.1	2e-75	(Oryza meridionalis)
STRING	ONIVA03G16560.1	1e-75	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-28	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]