PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010612-PA
Common NameOsI_11860
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 330aa    MW: 34227.5 Da    PI: 8.0341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010612-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-171664148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEde+l+ +v q+Gg+ +W++ +++ g++R+ k+c++rw +yl
  BGIOSGA010612-PA 16 KGPWTREEDEKLIAYVDQHGGHgSWRSLPKRAGLNRCCKSCRLRWINYL 64
                      79*******************9*************************97 PP
2Myb_DNA-binding54.42.8e-1770113146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+eE++ ++ ++  lG++ W+tIa +++ gRt++++k++w++
  BGIOSGA010612-PA  70 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 113
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24767IPR009057Homeodomain-like
PROSITE profilePS5129417.461164IPR017930Myb domain
SuperFamilySSF466892.55E-2913111IPR009057Homeodomain-like
SMARTSM007178.1E-141566IPR001005SANT/Myb domain
PfamPF002497.9E-151664IPR001005SANT/Myb domain
CDDcd001676.93E-111864No hitNo description
PROSITE profilePS5129426.74265119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2768119IPR009057Homeodomain-like
SMARTSM007174.3E-1669117IPR001005SANT/Myb domain
PfamPF002492.6E-1570113IPR001005SANT/Myb domain
CDDcd001673.75E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRLRPPCCD ESSVKKGPWT REEDEKLIAY VDQHGGHGSW RSLPKRAGLN RCCKSCRLRW  60
INYLRPDIKR GNFTPEEEQA IITLHSVLGN KWSTIATRLP GRTDNEIKNY WNTRLKKRLI  120
GAGIDPATHR ARPRPPAPGD LATALPQLVA LASLAVDLAV GHAAAAGGAW GAANGAVDYQ  180
QADAAAAQLQ CLQHLLLQPQ TTPATSATSG GGGHPTELNA ASSFLTQAVA SYAAAAATPL  240
PSLVVPGGSQ PLELKRWQDH IGGDHVGAVS PFAGAATVTG HHGGGGGGGD TPLSLCGGGG  300
GGGEFLPSEL TALLCSANAI GDLQSSNLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-27161194105C-Myb DNA-Binding Domain
1msf_C9e-27161194105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.867590.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977221740.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2434280.0AK243428.1 Oryza sativa Japonica Group cDNA, clone: J100067L15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631094.11e-177transcription factor MYB93
SwissprotQ9S9Z27e-70MYB93_ARATH; Transcription factor MYB93
TrEMBLA2XHH60.0A2XHH6_ORYSI; Uncharacterized protein
STRINGOGLUM03G20500.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP180181010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-65myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]