PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA010496-PA | ||||||||
Common Name | OsI_12129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 417aa MW: 44376.1 Da PI: 6.7122 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 355 | 377 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F + L H r+H BGIOSGA010496-PA 355 FVCPICSKEFGSGQALGGHKRSH 377 89**************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.16 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.91E-8 | 17 | 39 | No hit | No description |
Pfam | PF13912 | 7.4E-5 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 17 | 40 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 17 | 40 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.91E-8 | 274 | 301 | No hit | No description |
Pfam | PF13912 | 1.2E-8 | 278 | 303 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 279 | 306 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.5 | 279 | 301 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 281 | 301 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 355 | 377 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 355 | 382 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.0E-12 | 355 | 378 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 357 | 377 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD 60 DEGGDGKMVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHRGGDLLSS 120 SSCRPVLGRV RSHAPPAGGA AYVDDSEDVG VDVDGGGGDD RYRDREMLVM AAPRRRPRSM 180 RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHHHHDAVSD 240 DDLELSLSSP YADTEIRTKK RRKTTGAAST AGGEKRGRYE CHGCGRAFLS YQALGGHRAS 300 HKRINSNCSL VKPPADQPEP SIETSFSSAS TSVSPADTMI SAATISKTVK KATKFVCPIC 360 SKEFGSGQAL GGHKRSHSIA SELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 178 | PRRRPRS |
2 | 258 | 262 | KKRRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990792 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630118.1 | 0.0 | uncharacterized protein LOC4333158 | ||||
TrEMBL | A0A0E0GPC8 | 0.0 | A0A0E0GPC8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XI67 | 0.0 | A2XI67_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA03G23880.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 4e-20 | C2H2-like zinc finger protein |