PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA010384-PA

Common Name

OsI_12340

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 517aa MW: 59064.2 Da PI: 8.2547

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA010384-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32	4.2e-10	205	247	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++++++ +trt Cka+++ + +++ w+v+k++leHnH+l+ BGIOSGA010384-PA 205 QQETSSSLDTTRTCCKARVQFSVCRKEIWMVQKVVLEHNHDLV 247 5677788899*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02705	8.8E-22	1	119	IPR003855	Potassium transporter
Pfam	PF03101	6.8E-8	202	247	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0071805	Biological Process	potassium ion transmembrane transport
GO:0016020	Cellular Component	membrane
GO:0015079	Molecular Function	potassium ion transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MSVVLMVVMI VWHYVHVKRY KYELEHTVST DKVKEMLESH DLKRVRGVAL FYTELVQGIP 60 PIFPHLIEKI PTIHSVLVFI SIKHLPVPHV DTSERFLFRQ VELKDYKVFR CVARYGYRDS 120 LEEAKDFVVT LLENLQDYIR DVNLYTDEPH TISAHSSCNH SFSWEKPSGQ YAVHAEDMLT 180 PIESFSEITA LSNYGSDRLP HFKGQQETSS SLDTTRTCCK ARVQFSVCRK EIWMVQKVVL 240 EHNHDLVSPN KSHKLRSQRR VIEADRQLIG QIREAGMKPA QVYGFMKEWY GGADKVPFSK 300 MDCNNEIGRE RKKWTKYAKS GFYIQKQGSE KETLKAHAAR ISRHATSVVL KCSVSKELLD 360 DLEQAINKLD LEADNSLSNM QEKSCEVPLN SNGCVKDTLN GTISFLVPRV VKGPKSRQSK 420 DVVEKKKWQK KSSKKKFEDP NNASENRDED AGDVYGQSST MDANDMYGQS STMVANDVYG 480 ESSTMPTPLI QGGYTNLLFE VQQDCTLSSS ARKLHFP

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MSVVLMVVMI VWHYVHVKRY KYELEHTVST DKVKEMLESH DLKRVRGVAL FYTELVQGIP  60
PIFPHLIEKI PTIHSVLVFI SIKHLPVPHV DTSERFLFRQ VELKDYKVFR CVARYGYRDS  120
LEEAKDFVVT LLENLQDYIR DVNLYTDEPH TISAHSSCNH SFSWEKPSGQ YAVHAEDMLT  180
PIESFSEITA LSNYGSDRLP HFKGQQETSS SLDTTRTCCK ARVQFSVCRK EIWMVQKVVL  240
EHNHDLVSPN KSHKLRSQRR VIEADRQLIG QIREAGMKPA QVYGFMKEWY GGADKVPFSK  300
MDCNNEIGRE RKKWTKYAKS GFYIQKQGSE KETLKAHAAR ISRHATSVVL KCSVSKELLD  360
DLEQAINKLD LEADNSLSNM QEKSCEVPLN SNGCVKDTLN GTISFLVPRV VKGPKSRQSK  420
DVVEKKKWQK KSSKKKFEDP NNASENRDED AGDVYGQSST MDANDMYGQS STMVANDVYG  480
ESSTMPTPLI QGGYTNLLFE VQQDCTLSSS ARKLHFP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8AL47	0.0	B8AL47_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15086	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-15	FAR1-related sequence 5