PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA010180-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CPP

Protein Properties

Length: 635aa MW: 70251.6 Da PI: 7.7867

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA010180-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.7	6.4e-15	347	386	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCfa++++Cse+C+C +C+N+++ BGIOSGA010180-PA 347 SCKRCSCKKSKCLKLYCECFASKVYCSESCSCRGCFNDHS 386 689**********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.8E-16	346	387	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	22.743	347	463	IPR005172	CRC domain
Pfam	PF03638	9.3E-11	349	384	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MTIASKNCSI DRSLSQAYHD SPDNASILPT NLAQRIQLSS DTLGSDKRHG IAGKTDHETA 60 QKHAKLSCFD QRCLDKMKQL TSGMNVQKRD LAKTHNDEIT ACDWDYLGTQ YDSSVVPESD 120 LRFETAELLL ETPKNGDAMP GKSFLPIVEA NLENSRRKLF QGSADCYSQS AVDNIHAYCT 180 SRGKEVATNH VSGILPCPRE SQLIPDHHFS DSLEVPSDYM AMNPSAVSQH LRGLHRRSLF 240 NDKVRDPTMG VQSVSNLGAS TCATRHRSIP DDNYSKLVGS PVCALPNVDL HLVRMTEEML 300 APNTSEMNTH NQGDYSSQAT MPTSAGNSGQ ENPKRKRQKC QNDNVDSCKR CSCKKSKCLK 360 LYCECFASKV YCSESCSCRG CFNDHSHEET VLSTRNRIES RNPLAFAPKV IRTCGPGLEF 420 GEDSNATPAS SRHXRGCQLP RDHISGVGCS MSCRCENCKN SFGVRKGIER FETKEIERAD 480 RKMKDHPKEE QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST 540 RTSSHLHSPT RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL 600 RTGNTLSPTC RKELGLKSII PPFPSLTGDA NSELQ

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MTIASKNCSI DRSLSQAYHD SPDNASILPT NLAQRIQLSS DTLGSDKRHG IAGKTDHETA  60
QKHAKLSCFD QRCLDKMKQL TSGMNVQKRD LAKTHNDEIT ACDWDYLGTQ YDSSVVPESD  120
LRFETAELLL ETPKNGDAMP GKSFLPIVEA NLENSRRKLF QGSADCYSQS AVDNIHAYCT  180
SRGKEVATNH VSGILPCPRE SQLIPDHHFS DSLEVPSDYM AMNPSAVSQH LRGLHRRSLF  240
NDKVRDPTMG VQSVSNLGAS TCATRHRSIP DDNYSKLVGS PVCALPNVDL HLVRMTEEML  300
APNTSEMNTH NQGDYSSQAT MPTSAGNSGQ ENPKRKRQKC QNDNVDSCKR CSCKKSKCLK  360
LYCECFASKV YCSESCSCRG CFNDHSHEET VLSTRNRIES RNPLAFAPKV IRTCGPGLEF  420
GEDSNATPAS SRHXRGCQLP RDHISGVGCS MSCRCENCKN SFGVRKGIER FETKEIERAD  480
RKMKDHPKEE QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST  540
RTSSHLHSPT RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL  600
RTGNTLSPTC RKELGLKSII PPFPSLTGDA NSELQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.75387	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297722380	0.0

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	B9F9W1	0.0	B9F9W1_ORYSJ; Uncharacterized protein
STRING	ORGLA03G0251700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-32	Tesmin/TSO1-like CXC domain-containing protein