PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010142-PA
Common NameOsI_12815
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 356aa    MW: 37595.1 Da    PI: 9.1186
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010142-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA964.2e-30172228158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d+p+YVNaKQy++Il+RR +Rak+++e++l  k+rkpylheSRh+hA+rR+RgsgGrF
  BGIOSGA010142-PA 172 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 228
                       68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-33170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27174228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-23174196IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-23205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLSFKQSHEG FGHVAAAGAG PQQQQQPWWA GSQLLYGEAS PEEAALRDGG QFQVVPGGRA  60
ALDPAAPEPE KTAVPAMPKR GGGGAPEVLK FSVFSGNLEP GDTGEKNREH SATIAMQSPL  120
PEYNGHFELG LGQSMVSPNY PCIDQCYGLM TTYAMKSMSG GRMLLPLNAP ADAPIYVNAK  180
QYEGILRRRR ARAKAQRENR LVKGRKPYLH ESRHRHAMRR ARGSGGRFLN TKKEATAAGC  240
GGSSKTPLAS LVSPADVAHR PGSRGGGGRA SSLSGSDVSS PGGGMYDHHR HDDADAVDHY  300
NSIDHHLRTP FFTPLPIIMD SGGGGGDHGS HSAAAVAAPF RWATAAGDGC CELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A9e-18172230261HAPB protein
4g92_A9e-18172230261HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212221RHRHAMRRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.546600.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329916070.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880340.0AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK1063980.0AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628114.10.0nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA2XK470.0A2XK47_ORYSI; Uncharacterized protein
STRINGOS03T0647600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-24nuclear factor Y, subunit A10