PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010036-PA
Common NameGATA18, OsI_13054, TIFY1A
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 319aa    MW: 34069.7 Da    PI: 4.2786
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010036-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.3e-17215251135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  BGIOSGA010036-PA 215 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 251
                       **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.69874109IPR010399Tify domain
SMARTSM009796.8E-1074109IPR010399Tify domain
PfamPF062002.3E-1277108IPR010399Tify domain
PROSITE profilePS5101713.364143185IPR010402CCT domain
PfamPF062031.3E-14143183IPR010402CCT domain
SMARTSM004019.7E-9209262IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.524209268IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11213259No hitNo description
CDDcd002021.88E-16214269No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13214254IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-14215251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPDAAAAAAA AQDADAVMRD APADAAAGGG DNNDDDGDDG TEEDEEEDDD EEGDEEELPP  60
AEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESVTPEKV QAVLLLLGSC EMPPGLANMV  120
LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRRKG  180
QFAGRANMEG ESLSPGCELA SQGSGQDFLS RESKCQNCGT SEKMTPAMRR GPAGPRTLCN  240
ACGLMWANKG TLRNCPKAKV ESSVVATEQS NAAVSPSGID NKELVVPNPE NITASHGEVM  300
GDSTPANEAE IGAPKAQSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.28570.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO428216400.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1050250.0AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.10.0GATA transcription factor 18
SwissprotA2XKR70.0GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A0E0GRY30.0A0A0E0GRY3_ORYNI; Uncharacterized protein
STRINGONIVA03G31130.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-67ZIM-like 1