PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009643-PA
Common NameOsI_13898
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 421aa    MW: 43964.6 Da    PI: 4.8606
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009643-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-13230282557
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                       + +rrkq+NRe+ArrsR RK a + eLe  v +L  eN++L  +l   ++++ 
  BGIOSGA009643-PA 230 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 282
                       789***************************************99988888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-17226290IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-10228282No hitNo description
PROSITE profilePS5021711.392228282IPR004827Basic-leucine zipper domain
PfamPF001701.2E-10230281IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-9230280No hitNo description
PfamPF124982.4E-52297414IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGVASGGG GGVAGGGGGG NAMNRCPSEW  60
YFQKFLEEAV LDSPVPNPSP RAEAGGIRGA GGVVPVDVKQ PQLSAAATTS AVVDPVEYNA  120
MLKQKLEKDL AAVAMWRASG TVPPERPGAG SSLLNADVSH IGAPNSIGGN ATPVQNMLSG  180
PSGGSGSQLV QNVDVLVKQP TSSSSREQSD DDDMEGEAET TGTARPADQR LQRRKQSNRE  240
SARRSRSRKA AHLNELEAQV SQLRVENSSL LRRLADVNQK YNDAAVDNRV LKADVETLRA  300
KVKMAEDSVK RVTGMNALFP AASDMSSLSM PFNSSPSEAT SDAAVPIQDD PNNYFATNND  360
IGGNNNYMPD IPSSAQEDED FVNGALAAGK IGRPASLQRV ASLEHLQKRM CGGPASSGST  420
S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1360.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329786060.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8293750.0CT829375.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631619.10.0bZIP transcription factor RISBZ2-like
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA2XMX20.0A2XMX2_ORYSI; Uncharacterized protein
STRINGOS03T0796900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-34bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]