PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009202-PA

Common Name

OsI_09276

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 431aa MW: 43263.8 Da PI: 6.1236

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009202-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	251	289	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq BGIOSGA009202-PA 251 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 289 9***************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-12	222	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.792	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-7	250	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-6	251	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-12	251	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-9	251	293	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MQPNARQMHD GGGGGQDDFF DQMLSTLPAV WSELGSGKPA WDLTAGAVGG GGGASDDHSA 60 AAFDDSALLA SRLRQHQIDG GGDKPIMLQL SDLHRHHGLA AGDDSGGAAG FLPLSLFADR 120 SQDDIDAAFK SPNGARGDHA LYNGFGAAGM HGAAAMQPPP FGQGGSMPAQ SFGGGAAASG 180 GGGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERVYH SPTTFPFSPP 240 FFIASMPCCL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL 300 GGASAVAPLV ANMSSESNGN GNATSSSGNG EAANGSSNGD NNGGGTLRVT EQQVAKLMEE 360 DMGSAMQYLQ GKGLCLMPIS LATAISSATS SSLLPRTGGG AGGSLHEGGN GTSPPLVNGT 420 ATGCDDAGRK Q

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MQPNARQMHD GGGGGQDDFF DQMLSTLPAV WSELGSGKPA WDLTAGAVGG GGGASDDHSA  60
AAFDDSALLA SRLRQHQIDG GGDKPIMLQL SDLHRHHGLA AGDDSGGAAG FLPLSLFADR  120
SQDDIDAAFK SPNGARGDHA LYNGFGAAGM HGAAAMQPPP FGQGGSMPAQ SFGGGAAASG  180
GGGGGGGSAS AAAAAGASSG GGAAAPPRQR QRARRGQATD PHSIAERVYH SPTTFPFSPP  240
FFIASMPCCL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  300
GGASAVAPLV ANMSSESNGN GNATSSSGNG EAANGSSNGD NNGGGTLRVT EQQVAKLMEE  360
DMGSAMQYLQ GKGLCLMPIS LATAISSATS SSLLPRTGGG AGGSLHEGGN GTSPPLVNGT  420
ATGCDDAGRK Q

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.84900	6e-95	leaf

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	6e-71	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A2XAJ4	0.0	A2XAJ4_ORYSI; Uncharacterized protein
STRING	OGLUM02G37030.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-47	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]