PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA009051-PA | ||||||||
Common Name | OsI_08934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 215aa MW: 23432.6 Da PI: 11.7108 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 37.4 | 8.8e-12 | 33 | 114 | 16 | 93 |
TCP 16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 g R RR Rls+++ + f+d+q++LG+ ++sk ieWL+ +a a l + +a + ++s + s+++ + +ka + BGIOSGA009051-PA 33 GVRARRtstTRLSVPTSIAFYDIQNRLGVNRPSKSIEWLICAALVARLFLRPPQHRPAPHPrRPSSGRPSEEQARTRKATVA 114 5677773336******************************999998888888866666333333333333332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.614 | 19 | 82 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.0E-9 | 32 | 75 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEEVIVGKEC KRPRYALVGV DGHGSDVADE PGGVRARRTS TTRLSVPTSI AFYDIQNRLG 60 VNRPSKSIEW LICAALVARL FLRPPQHRPA PHPRRPSSGR PSEEQARTRK ATVAASPGKS 120 GEKRRKTRSG CAAWKAERIA KLRVWREGWM PRREASTSAA SGGQSWIRKL STPGSGDSCS 180 CSDAKPAKRR WAEKAGEVVA REAGGAERGG GGRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.79459 | 1e-51 | callus| flower| leaf| panicle| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A2X9L7 | 1e-149 | A2X9L7_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA06G04550.1 | 1e-117 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19965 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-10 | TCP family protein |