PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009044-PA
Common NameOsI_08921
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 383aa    MW: 43040.8 Da    PI: 8.6977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009044-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.1e-53131401128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       + pGfrFhPtdeelv +yL++k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++
  BGIOSGA009044-PA  13 MLPGFRFHPTDEELVRFYLRRKIQQKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIY 104
                       579***************************.89***************9888999************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  BGIOSGA009044-PA 105 SSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 140
                       *966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-599172IPR003441NAC domain
PROSITE profilePS5100556.9213172IPR003441NAC domain
PfamPF023651.2E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MRSSDIEKQD EVMLPGFRFH PTDEELVRFY LRRKIQQKSL PIELIRQLDI YKYDPWDLPK  60
LASTGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSDGSK CIGLKKSLVF  120
YKGRAAKGVK TDWMMHEFRL PSLTDPSLPQ KKPLEKIIPP NDSWAICRIF KKTNSTAQRA  180
LSHSWVSPPL SSTNEAYTAP VSQTTQRSQH ISDNTSSVMT DAISSTIQFT GSSYLPSTVP  240
SCHNPLSMID SNSRPDASVP LSSPVAEHQT MGILSAIPLD ITAGIDIASM VFNASSFTLP  300
NMDRMTANIE FGQPQKCNSS SSMTNRCVVD MPDVANNINS GPRSINFNLQ GTLSDDWRMT  360
LPWESLPCTT EVSTNFQSTK CYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5311753171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.541380.0callus| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975999170.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878685.10.0putative NAC domain-containing protein 94
TrEMBLA0A0E0HLA00.0A0A0E0HLA0_ORYNI; Uncharacterized protein
TrEMBLA2X9K50.0A2X9K5_ORYSI; Uncharacterized protein
STRINGONIVA06G04660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137172629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-106NAC family protein